Tags: PCA, R, Package, Tool
41 days ago
poRe: an R package for the visualization and analysis of nanopore sequencing data
Motivation: The Oxford Nanopore MinION device represents a unique sequencing technology. As a mobile sequencing device powered by the USB port of a laptop, the MinION has huge potential applications. To enable these applications, the bioinformatics community will need to design and build a s...Tags: poRe, R, package, visualization, analysis, nanopore, sequencing, data
2354 days ago
How to fix the MacOS error for ‘ddalpha’ R package installation ?
> install.packages(c('ddalpha', 'recipes')) There is a binary version available but the source version is later: binary source needs_compilation ddalpha 1.3.1 1.3.1.1 TRUE Do you wa...Tags: R, ddalpha, package
2282 days ago
Tags: dupRadar, package, R, rna-seq
2281 days ago
Tags: scikit-bio, open-source, python, package, algorithms, educational, resources, bioinformatics
2256 days ago
chromoMap-An R package for Interactive visualization and mapping of human chromosomes
chromoMap is an R package that provides interactive, configurable and elegant graphics visualization of the human chromosomes allowing users to map chromosome elements (like genes, SNPs etc.) on the chromosome plot. It introduces a special plot viz. the "chromosome heatmap" that, in addition to m...Tags: R, package, Interactive, visualization, mapping, human, chromosomes, chroMap
2140 days ago
visNetwork: an R package for network visualization, using vis.js javascript library
visNetwork is an R package for network visualization, using vis.js javascript library (http://visjs.org/). All remarks and bugs are welcome on github : https://github.com/datastorm-open/visNetwork. Features Based on htmlwidgets, so : compatible with shiny,...Tags: visNetwork, R, package, network, visualization, vis.js, javascript, library
1942 days ago
Tags: Genobuntu, software, package, packages, oriented, NGS, assembly, genome
1971 days ago
regioneR: an R package for the management and comparison of genomic regions
Regioner is an R package for the management and comparison of genomic regions. It offers a set of function for basic manipulation of region sets extending the functionality of GenomicRanges and a powerful and customizable permutation test framework. With it, it's possible to study the association...Tags: regioneR, R, package, management, comparison, genomic, regions
1971 days ago
GeneOverlap: An R package to test and visualize gene overlaps
Overlapping gene lists can reveal biological meanings and may lead to novel hypotheses. For example, histone modification is an important cellular mechanism that can pack and re-pack chromatin. By making the chromatin structure more dense or loose, the gene expression can be turned on or off. Tri...Tags: GeneOverlap, R, package, visualize, gene, overlaps
1955 days ago