Results for "packages"
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Bioinformatics software for biologists in the genomics era
...be sensitive to the reality that comparatively small teams of biologists have historically developed some of the most popular biological software packages in molecular evolutionary ana...3780 days ago
Orione – a web-based framework for NGS analysis in microbiology
...caffolding, bacterial RNA-Seq, gene annotation and metagenomics. However, the construction of computational pipelines that use different software packages is difficult due to a lack of...3568 days ago
A simple tutorial for a complex ComplexHeatmap
...mming Language (R Core Team (2020)) package that is currently listed in the Bioconductor package repository. install and load required packages require(RColorBrewer)...1123 days ago
- ...squo;s free and open source, and works great on Windows, Mac, and Linux. The developers and expert trainers are the authors of several popular R packages, including ggplot2, plyr, lub...
3411 days ago
- ...represent positions and locations (ranges of positions) on sequences, particularly nucleotide sequences. My original motivation for writing these packages was handing the locations of...
3410 days ago
- ...genomic sequences, alignments, variation etc.), as well as specialized tool sets for various analyses. It also features three sequence alignment packages: Satsuma, a highly paralleliz...
3002 days ago
- First step: Install & load “VennDiagram” package. # install.packages('VennDiagram') library(VennDiagram) Second step: Load data Add filepath if “catdoge.csv” is not in working-directory. d <- read.csv("catdoge.csv")
2926 days ago
- ...http:// if https:// URLs are not supportedsource("https://bioconductor.org/biocLite.R")biocLite("clusterProfiler") https://www.bioconductor.org/packages/devel/bioc/vignettes/clusterP...
2873 days ago
- gKaKs is a codon-based genome-level Ka/Ks computation pipeline developed and based on programs from four widely used packages: BLAT, BLASTALL (including bl2seq, formatdb and fastacmd),...
2800 days ago
- ...s. This easy-to-use algorithm, ‘GeneBreak’, is implemented in R (www.cran.r-project.org) and is available from Bioconductor (www.bioconductor.org/packages/release/bioc/html/GeneBreak.h...
2148 days ago
