3947 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...ssemblies of mammalian genomes from massively parallel sequence data. Gnerre et al,...ibes Trans-ABySS, a pipeline to use the ABySS parallel assembler for de novo transcr...enome evolution and meiotic maps by massively parallel DNA sequencing: spotted gar,...3780 days ago
Commercial and public next-gen-seq (NGS) software
...ce assembler that is designed for very short reads. The single-processor version is useful for assembling genomes up to 40-50 Mbases in size. The parallel version is implemented using...3519 days ago
Software packages for next gen sequence analysis
...ce assembler that is designed for very short reads. The single-processor version is useful for assembling genomes up to 40-50 Mbases in size. The parallel version is implemented using...3243 days ago
2870 days ago
Genome Assembly Tools and Software - PART1 !!
...r 2 – A scalable and fully parallelized Genome Assembler There...tput of new generation massively parallel sequencing machines and the a...ABySS 1.9.0 – de novo, parallel, paired-end Sequence Assemble...executables, being developed in parallel streams: cortex_con (primary...2686 days ago
2218 days ago
Parallel Processing with Perl !
...h do it for you very efficiently. One really useful module is Parallel::ForkManager. You can use Parallel::ForkManager to manage the nu...tep2: open you directory comtaining you split files and start Parallel::ForkManager.For example:open...2080 days ago
Steps to find all the repeats in the genome !
...Replace the following placeholders with appropriate values: <number_of_processors>: The number of processors/threads you want to use for parallel processing. <divergence_v...249 days ago