2567 days ago
2595 days ago
BEAP: Blast Extension and Assembly Program
The Blast Extension and Assembly Program (BEAP) is a computer program that uses a short starting DNA fragment, often a EST or partial gene segment, as "primer", to recursively blast n...2192 days ago
Genome Assembly Tools and Software - PART2 !!
...mputer program that uses a short starting DNA fragment, often a EST or partial gene segment, as “prime...uilibrium BRANCH 1.8.1 – boosting RNA-Seq Assemblies with Partial or related Genomic SequencesB...2723 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
...neages split represent ancestor taxa to the descendant taxa appearing at the terminal points of the cladogram. expressed sequence tag (EST) -- A partial coding sequence isolated at r...2499 days ago
Edit distance application in bioinformatics !
...implementation of the Brew edit distance, which is another algorithm based on edit weights. Text::Fuzzy provides a number of operations for partial or fuzzy matching of text bas...2378 days ago
3583 days ago
2727 days ago
Glia: a Graph/Smith-Waterman (partial order) aligner/realigner
glia's main use is as a local realigner. It will realign reads to a set of known (or putative) variants in a VCF, both consuming and producing an ordered stream of BAM alignments. More at https://github.com/ekg/glia glia -f ~/human_g1k_v37.fasta -t 20:62900077-62902077 -v variants.vc...Tags: Glia, Graph, Smith-Waterman, partial, order, aligner, realigner
1596 days ago