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  • Genome Assembly Tools and Software - PART2 !!

    ...mputer program that uses a short starting DNA fragment, often a EST or partial gene segment, as “prime...uilibrium  BRANCH 1.8.1 – boosting RNA-Seq Assemblies with Partial or related Genomic SequencesB...

    2723 days ago

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  • Scalpel

    ...e repeats that are a regular source of error in indel calling. When Scalpel assembles an exon, it collects reads that map to that exon (including partial matches), splits them into k-...

    3583 days ago

  • Bioinformatics Contest 2017!

    ...ogramming. The goal is to correctly solve as many problems as possible within 24 hours. Some of them will be approximation problems and will have partial grades. All rounds will be he...

    2727 days ago

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  • Glia: a Graph/Smith-Waterman (partial order) aligner/realigner

    glia's main use is as a local realigner. It will realign reads to a set of known (or putative) variants in a VCF, both consuming and producing an ordered stream of BAM alignments.  More at https://github.com/ekg/glia glia -f ~/human_g1k_v37.fasta -t 20:62900077-62902077 -v variants.vc...

    Tags: Glia, Graph, Smith-Waterman, partial, order, aligner, realigner

    1596 days ago