PANEV: an R package for a pathway-based network visualization
PANEV (PAthway NEtwork Visualizer) is an R package set for gene/pathway-based network visualization. Based on information available on KEGG,...levels (from 1 to n) of interconnected upstream and downstream pathways....1549 days ago
netGO: R-Shiny package for network-integrated pathway enrichment analysis
netGO is an R/Shiny package for network-integrated pathway enrichment analysis.netGO provides user-interactive visualization of enrichment analysis results and related networks. Currently, netGO supports analysis for four...1546 days ago
ShinyGO v0.61: Gene Ontology Enrichment Analysis + more
2/3/2020: Now published by Bioinformatics. 11/3/2019: V 0.61, Improve graphical vi...e your gene list to get enriched GO terms and othe pathways for over 315 plant and anima...RING-db (v.10). In addition, it also produces KEGG pathway di...1435 days ago
1353 days ago
MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data
The algorithm presented herein, Mining Algorithm for GenetIc Controllers (MAGIC), uses ENCODE ChIP-seq data to look for statistical enrichment of TFs and cofactors in gene...1258 days ago
PhyloHerb: A highâthroughput phylogenomic pipeline for processing genome skimming data
Phylogenomic Analysis Pipeline for Herbarium Specimens What is PhyloHerb: Phylo...w-coverage (5x cpDNA) plastome phylogeny, recycling plastid genes from target enrichment data, retrieving low-copy nuc...245 days ago
PhyloHerb: Phylogenomic Analysis Pipeline for Herbarium Specimens
What is PhyloHerb: PhyloHerb is a wrapper program to process genome skimming&nbs...w-coverage (5x cpDNA) plastome phylogeny, recycling plastid genes from target enrichment data, retrieving low-copy nuc...77 days ago
41 days ago