Results for "peak calling"
Blogs
Bioinformatics PhDs - Cover Letter
..., call the department and ask to speak to someone on the search comm...has been published and Yale comes calling. They often don't se...to the point, Yale rarely "comes calling." An even greater burde...t doing some research so you can speak in more specific terms about how...3360 days ago
Calling narrow and broad peaks from ChIP-Seq data
...emented in Strand NGS for detecting the binding sites of transcription factor (narrow peaks) and enriched regions of histone modification (broad peaks) from ChIP-Seq data.Read the benchmarking study on Calling narrow and broad peaks from C...3192 days ago
Software and Tools to detect structure variation with long reads !!
Uncovering the connection between genetics and heritable...eatures including the following. Unified variant calling user interface with built-in cluster compute support Small indel calling (2-49 bp) Improved inversion...2602 days ago
String graph based genome assembly software and tools !
In graph theory, a string graph is an intersection graph o...ent. The SGA assembly has three distinct phases. The first phase corrects base calling errors in the reads. The seco...2323 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
MinION is the only portable real-time device for DNA and RNA sequencing. Each...ttps://sourceforge.net/p/rpore/wiki/Home/ PoreSeqError-correction and variant-calling softwarehttps://github.com/ts...2315 days ago
BBTools for bioinformatician !
BBMap.sh Mapping Nanopore reads BBMap.sh has a length cap of 6kbp. Reads longer than this will be broken i...quence data Code: $ kmercountexact.sh in=reads.fq khist=histogram.txt peaks=peaks.t...2265 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling evaluation for improved consensus accuracy (Arang Rhie)● P...ng and other low-complexity gene amplicon data; performs allele calling while detecting polymorphic s...986 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files...t reads (Kraken 2; optional) Variant calling Read alignment (Bowtie 2) S...mosdepth) Choice of multiple variant calling and consensus sequence genera...Pangolin) Clade assignment, mutation calling and sequence quality checks (...872 days ago
Common steps for reads mapping !
Mapping reads to a reference genome...in many types of genomic analysis, such as variant calling and gene expression analysis....ads based on quality, removing duplicate reads, and calling variants. Overall, mappi...418 days ago
