Results for "perform"
Bio-Scripts
...) /; } sub main() { #Define the arguments my ($seqfile, $second, $outfile, $dotfile, $word, $step, $pixels, $title, $help); #Perform Checking -- remind the user t...2707 days ago
- ...sMetrics (Picard) Collect metrics about coverage and performance of whole genome sequencin...(Picard)(BETA Tool) (Experimental) Collect metrics about coverage and performance of whole genome sequencin...
2089 days ago
Tadpole is 250x faster than SPADes assembler !
...contig: Make contigs from kmers. extend: Extend sequences to be longer, and optionally perform error correction....990 days ago
Install Install Gffcompare on Ubuntu / Linux
#Gffcompare is a program that is used to perform operations on general feature format (GFF) and general transfer format (GTF) files. It has a binary distribution compatible with the l...837 days ago
Install StringTie on ubuntu / Linux !
#StringTie is a software program to perform transcript assembly and quantification of RNAseq data. The binary distributions are available so to install we can just download this distr...837 days ago
Script to rapid genome clustering based on pairwise ANI
...-in -dbtype nucl -out Next, use megablast from blast+ package to perform all-vs-all blastn of sequence...ocal alignments between sequence pairs: anicalc.py -i -o Finally, perform UCLUST-like clustering using...649 days ago
Perl script for chi-squared test !
#!/usr/bin/perl # # chidi.pl # # A script to perform a chi-squared test of the dinucleotide frequencies...; ############################################################ # Perform chi-squared test ###########...425 days ago
Perl script for six frame translation !
...Read the input FASTA file my $seqio = Bio::SeqIO->new(-file => $input_fasta, -format => 'fasta'); my $sequence = $seqio->next_seq; # Step 2: Perform six-frame translation my @fr...108 days ago
Python script to finds extact similar sequence between two multi fasta files !
...pplications import NcbiblastnCommandline import os import sys def perform_local_blast(query_file, subje...subject_file = sys.argv[2] output_file = sys.argv[3] # Perform local BLAST perform_loca...17 days ago
