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How to install Perl modules manually, using CPAN command, and other quick ways
...r you need to install several perl modules and dependencies. Installing Perl modules manually by resolving...tion as shown below. Install Perl Modules using CPAN automatica...nbsp; 00:00(3/5): perl-CPAN-1.9205-31.fc9.i386.rpm&n...quick and best way to install Perl modules, Bioperl. Following a...3947 days ago
Five unique traits of effective computational biologist
...y shut out. In other concrete term, the bad biological programmer learn Perl's regular expression when the...interesting; and the great biological programmer also read about the BioPerl packages, genomics, DNA strin...3948 days ago
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Regular Expression Cheat Sheet
The Regular Expression are the sole of Perl language, and for bioinformatician it is just a magical stick to resolve gingatic string data. We did not find any good and user friendly...3950 days ago
Detect the sequence pattern and its location in fasta file with match and mismatches information.
This script is one of my old script to detect some centromeric pattern in chromosomes. User can also control the number of mismatches allowed through command line .. To run: perl centro.pl3865 days ago
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Bioinformatics Courses Around the World
...y Kevin Karplus, UC Santa Cruz) Iowa State University, PhD Program in Bioinformatics and Computatinal Biology (Ames, Iowa) Perl Programing Course for Bioinfo...3941 days ago
Useful Links for Bioinformaticians
...ava/FAQs-and-Tutorials.html http://www.javaworld.com/ http://www.simplilearn.com/resources-to-learn-java-programming-article Perl Tutorials www.devdaily.com/perl/ www.pageresource.com/cgirec...3128 days ago
Bioinformatics: Introduction to PERL
...d provides an introduction to programming using Perl. By the end of this course, attendees should be able to write simple Perl programs and to understand mo...course will be taught using the online Learning Perl materials created by Sofia Ro...3948 days ago
Perl Maven tutorial by Gabor Szabo
I personally reccoment this tutorial for Perl users. More detail http://perlmaven.com/3919 days ago
Structural polymorphism analysis from NGS data
...AIZING http://www.amaizing.fr/). The position requires a doctoral degree (PhD) in bioinformatics with strong expertise in script writing (Python/Perl) and pipeline development....3946 days ago
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Perl Poem: Parse it in both Perl and English!
...dowed by that of the reigning Perl Poet, Sharon Hopkins. She has written quite a few Perl poems, as well as a paper on...es: Computer Poetry Meets the Perl Programming Language". (The p...length(of-days) # listen (a perl poem)# Sharon Hopkins# rev. J...3916 days ago
Bioinformatician special skills !!
...]?\d+))?)/; next unless /((?:(?!\\$).)*)/; $line =~ /^(.+)(e|r)(.*)$/; /"(?:[^"\\]++|\\.)*+"/; /^[+-]?\ *(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?$/; perl -ne 'BEGIN{$/=">"}if(/^s*(...3893 days ago
Bioinformatics 101 - Running BLAST
How to format the database for BLAST, run the command, view the output file, and use BioPerl and Perl to parse the output. By David Francis, Ohio State University. Delivered live at the...3894 days ago
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Comment on "Benchmarking Perl Module !"
...e. This can be done using the Perl Benchmark module, which provi...nd compare the performance of Perl code. Here is a quick guide...ses the functionality of your Perl module. This program should t...mpare the performance of your Perl module to other modules or to...413 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
If using conda conda create --name perlENV perlconda activate perlENV conda install -c bioconda perl-bundle-bioperl conda install -c bioconda perl-bioperl413 days ago