Results for "perl"
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JBrowse: Embeddable genome browser built completely with JavaScript and HTML5
JBrowse is a fast, embeddable genome browser built completely with JavaScript and HTML5, with optional run-once data formatting tools written in Perl. Headline Features: Fast, sm...2135 days ago
- VCFtools contains a Perl API (Vcf.pm) and a number of Perl scripts that can be used to per...rsecting, complements, etc. The Perl tools support all versions of...inly with diploid data, but the Perl tools aim to support polyploi...http://vcftools.sourceforge.net/perl_module.html
2096 days ago
FinisherSC:a repeat-aware tool for upgrading de novo assembly using long reads
...ds in contigs.fasta or raw_reads.fasta using the following command. perl -pe 's/>[^\$]*$/">Seg"...> newRaw_reads.fasta cp newRaw_reads.fasta raw_reads.fasta perl -pe 's/>[^\$]*$/">Seg"...2083 days ago
Synima: a Synteny imaging tool for annotated genome assemblies
Synima written in Perl, which uses the graphical features of R. Synima takes orthologues computed from reciprocal best BLAST hits or OrthoMCL, and DAGchainer, and outputs an ov...2012 days ago
- ...a simple and effective tool for visualizing the distribution of sites along a simplified transcript model. In this work, we introduce MetaPlotR, a Perl/R pipeline for creating metag...
2006 days ago
ANItools web: a web tool for fast genome comparison within multiple bacterial strains
ANItools is a software package written by PERL scripts that can be run in a Linux/Unix system. If you want to compare bacterial genomes and calculate their average nucleotide identit...1997 days ago
- CViT - Chromosome Viewing Tool. A collection of Perl scripts that enable quick visualizations of features on linkage groups, psuedochromosomes or cytogenetic maps. Intended for whole...
1948 days ago
- LTR_retriever is a command line program (in Perl) for accurate identification of LTR retrotransposons (LTR-RTs) from outputs of LTRharvest, LTR_FINDER, and/or MGEScan-LTR and generat...
1937 days ago
- ...mated method facilitating genome-wide discovery of putative horizontal gene transfers. BMC Genomics. 2014. 15:717. Usage: Simply execute perl HGTector.pl, or, open GU...
1929 days ago
MFannot : a program for the annotation of mitochondrial and plastid genomes
...gram for the annotation of mitochondrial and plastid genomes MFannot is a program for the annotation of mitochondrial and plastid genomes. It is a PERL wrapper around a set of diver...1712 days ago
