MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads
MitoHiFi v3.2 is a python pipeline distributed under MIT License ! MitoHiFi was first developed to assemble the mitogenomes for a wide range of species in the Darwin Tree of Life Project (DToL) https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-023-05385-y255 days ago
PhyloHerb: A high‐throughput phylogenomic pipeline for processing genome skimming data
Phylogenomic Analysis Pipeline for Herbarium Specimens What is PhyloHerb: PhyloHerb is a wrapper...g, and Charles C. Davis. 2022. PhyloHerb: A high‐throughput phylogenomic pipeline for processing genome‐skimmin...254 days ago
PhyloHerb: Phylogenomic Analysis Pipeline for Herbarium Specimens
What is PhyloHerb: PhyloHerb is a wrapper program to process genome skimming data collected from plant materials. The outcomes include the plastid genome (plas...86 days ago
pipesnake: bioinformatics best-practice analysis pipeline for phylogenomic reconstruction
...sp;is a bioinformatics best-practice analysis pipeline for phylogenomic reconstructi...ead 'second-generation' sequencing data. The pipeline is built using Nextflow,...bsp;Nextflow DSL2 implementation of this pipeline uses one container per proces...86 days ago
ExRec: Exclusion of Recombined DNA
...Rec (Exclusion of Recombined DNA) is a Python pipeline that implements the four-game...rom up to thousands of DNA sequence loci. The pipeline consists of five standalone a...cts the four-gamete filtering procedures. The pipeline outputs recombination-filtere...50 days ago
Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial Genomes
Bactopia is a flexible pipeline for complete analysis of bacterial genomes. The goal of Ba...a can be split into two main parts: Bactopia Analysis Pipeline, and Bactopia Tools. Bactopia Analysis Pipeline is the main per-isolate&...yesterday