2532 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
...perience, so that NGS data can be analyzed efficiently even when only modest computational resources are available. https://webchem.ncbr.muni.cz/Platform/App/CrocoBLAST2475 days ago
Web Apollo: a web-based genomic annotation editing platform
Web Apollo is the first instantaneous, collaborative genomic annotation editor available on the web. One of the natural consequences following from current advances in s...2472 days ago
NanoSim: nanopore sequence read simulator based on statistical characterization.
...genome. NanoSim is written in Python and R. The source files and manual are available at the Genome Sciences Centre website: http://www.bcgsc.ca/platform/bioinfo/software/nanosim htt...2329 days ago
Delta: a new Web-based 3D genome visualization and analysis platform
Delta is an integrative visualization and analysis platform to facilitate visually annotating and exploring the 3D physical architecture of genomes. Delta takes Hi-C or...2327 days ago
xmatchview: smith-waterman alignment visualization
...;http://www.phrap.org) uses an implementation of the Smith-Waterman algorithm for comparing DNA sequences that is sensitive. http://www.bcgsc.ca/platform/bioinfo/software/xmatchview2319 days ago
PGAP-X: Extension on pan-genome analysis pipeline
PGAP-X is a microbial comparative genomic analysis platform with graphic interface. Serials of algorithms and methodologies have been developed and integrated to analyze and visualize...2293 days ago
JBrowse: Embeddable genome browser built completely with JavaScript and HTML5
...irectly over HTTP. Serve huge datasets from a single low-cost cloud instance. Can run as a stand-alone app on OSX and Windows using the Electron platform Highly extensible plugin arc...2136 days ago
Qualimap2: Evaluating next generation sequencing alignment data
Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User Inteface (GUI) and a command-line interface to facilitate the quali...2062 days ago
1973 days ago