Bioinformatics tools for telomere to telomere assembly !
...)● SQANTI3 – an automated pipeline for the classification of long-read transcripts that can assess the quality of data and the preprocessing pipeline (Rocío Amor&i...1007 days ago
2897 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
With kallisto | bustools you can Generate a cell x gene or cell x transcript equivalence class count matrix Perform RNA velocity and sing...1141 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...010 PubMedCentral Two-stage Poisson model for testing RNA-seq data. Auer and Doerge, SAGMB 10(1), article 26 Full Text Experimental design, preprocessing, normalization and differenti...3794 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...termediate VCF Output: VCF MuTect Description: Broad Institute, identification of somatic point mutations in cancer genomes; requires preprocessing of reads (GATK) Input: same...2924 days ago
RNA-Seq Data Pathway and Gene-set Analysis Workflows
...orial, “RNA-Seq Data Pathway and Gene-set Analysis Workflows“. First cover a full workflow from preparation, reads counting, data preprocessing, gene set test, to pathway vi...3848 days ago
FastProNGS: fast preprocessing of next-generation sequencing reads
FastProNGS to integrate the quality control process with automatic adapter removal. Parallel processing was implemented to speed up the process by allocating multiple threads. Compared with similar up-to-date preprocessing tools, FastProNGS is by far the fastest.Tags: FastProNGS, fast, preprocessing, next-generation, sequencing, reads
1241 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
With kallisto | bustools you can Generate a cell x gene or cell x transcript equivalence class count matrix Perform RNA velocity and single-nuclei RNA-seq analsis Quantify data from numerous technologies such as 10x, inDrops, and Dropseq. Customize workflows fo...Tags: Modular, efficient, constant, memory, single-cell, RNA-seq, preprocessing, bustool, kallisto
1141 days ago
Comment on "List of popular bioinformatics software/tools"
EpiExplorer is a web tool that allows you to use large reference epigenome datasets for your own analysis without complex scripting or laborous preprocessing. http://epiexplorer.mpi-inf.mpg.de/3696 days ago