DendroPy: a Python library for phylogenetic computing
DendroPy is a Python library for phylogenetic computing. It provides classes and functions for the simulation, processing, and manipulation of phylogenetic trees and character matrices,...2199 days ago
AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
...three folders: good, bad and QC folders, which contains good reads, bad reads and the QC results of each fastq file/pair. Currently it supports processing data from HiSeq 2000/2500/300...2132 days ago
NanoPack: visualizing and processing long-read sequencing data
The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. The source code can be found at https://github.com/wdecoster/nanopack, together...2089 days ago
vcfR: a package to manipulate and visualize VCF data in R
...tions. This information can then be used for quality control or other purposes. Additional functions provide visualization of genomic data. Once processing is complete data may be writt...2013 days ago
AMStat: display statistics of large sequence files from next generation sequencing projects
...iety of problems, such as remaining linker and adaptor sequences, causing poor mapping. Apart from this SAMStat can be used to verify individual processing steps in large analysis pipel...1998 days ago
NanoPack: visualizing and processing long-read sequencing data
The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. The source code can be found at https://github.com/wdecoster/nanopack, together with...1952 days ago
ZENBU: a collaborative, omics data integration and interactive visualization system
...ChipSeq, CAGE and other types of next-generation-sequence-tag (NGS) based data. ZENBU allows for novel data exploration through "on-demand" data processing and interactive linked-visual...1942 days ago
molinspiration: broad range of cheminformatics software tools supporting molecule manipulation
Molinspiration offers broad range of cheminformatics software tools supporting molecule manipulation and processing, including SMILES and SDfile conversion, normalization of m...1926 days ago
1924 days ago
OMTools: a software package for visualizing and processing optical mapping data
OMTools, an efficient and intuitive data processing and visualization suite to handle and explore large-scale...g profiles. OMTools includes modules for visualization (OMView), data processing and simulation. These modules...1859 days ago