Referee: Genome assembly quality scores
.... Referee takes as input the genotype likelihoods calculated for all 10 genotypes given the called reference base at each position. Referee is a program to calculate a quality score...2022 days ago
pyGenomeTracks: Standalone program and library to plot beautiful genome browser tracks
pyGenomeTracks aims to produce high-quality genome browser tracks that are highly customizable. Currently, it is possible to plot: bigwig bed (many options) bedgraph links (represented as arcs) Hi-C matrices (if HiCExplorer is installed)2017 days ago
AMStat: display statistics of large sequence files from next generation sequencing projects
SAMStat is an efficient C program to quickly display statistics of large sequence files from next generation sequencing projects. When applied to SAM/BAM files all statist...2017 days ago
ANItools web: a web tool for fast genome comparison within multiple bacterial strains
...inux/Unix system. If you want to compare bacterial genomes and calculate their average nucleotide identity (ANI), you could download and run this program directly. Or you could send u...2012 days ago
RepeatMasker compatible blast tool
...ompatible version of the standard NCBI blastn program. The primary difference betwe...he NCBI distribution is the addition of a new program "rmblastn" for use with Repea...w necessary features to the stock NCBI blastn program. These include: Support fo...1989 days ago
1987 days ago
FGENESH - Program for predicting multiple genes in genomic DNA sequences
...inder available - see the figure and the table below. In recent rice genome sequencing projects, it was cited "the most successful (gene finding) program (Yu et al. (2002) Scienc...1976 days ago
ALLHiC: Phasing and scaffolding polyploid genomes based on Hi-C data
...caffolding polyploid genome is that Hi-C signals are frequently detected between allelic haplotypes and any existing stat of art Hi-C scaffolding program links the allelic haplotypes...1976 days ago
kallisto: a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data
kallisto is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencin...1958 days ago
1958 days ago