Results for "protein interactions"
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PolyPhen-2: Prediction of functional effects of human nsSNPs
PolyPhen-2 (Polymorphism Phenotyping v2) is a tool which predicts possible impact of an amino acid substitution on the structure and function of a human protein using straightforward physical and comparative considerations.2916 days ago
- A free extensible and customizable gene annotation portal, a complete resource for learning about gene and protein function. http://biogps.org/#goto=welcome
2916 days ago
- DarkHorse is a bioinformatic method for rapid, automated ident...of phylogenetically atypical proteins on a genome-wide basis. It w...x (LPI) score for each genome protein. LPI scores are inversely pr...s of horizontally transferred proteins, but can also serve as an in...
2886 days ago
- Recent studies of the human genome have in.... Genomic technologies for mapping interactions between DNA regions, e.g., Ch..., can generate genome-wide maps of interactions between regulatory elements....gets and their direct and indirect interactions. AVAILABILITY: Qu...
2881 days ago
- Kaiju is a program for the taxonomic classification of metagenomic high-th...abase containing microbial and viral protein sequences. By default, Kaiju...icrobial subset of the non-redundant protein database nr used by NCBI BLAS...ptionally allowing mismatches in the protein alig...
2881 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. MUSCLE >Mult...ents for benchmarking. PALS >Whole-genome alignment. PREFAB >Protein Refe...2873 days ago
- Records in 4DGenome are compiled through comprehensive l...rimentally-derived and computationally-predicted interactions. The current release contains...-derived and 3,605,176 computationally-predicted interactions in 5 organisms. Experimental...
2874 days ago
AutoDock Vina: an open-source program for doing molecular docking.
AutoDock Vina is an open-source program for doing molecular docking. It was designed and implemented by ...s Lab at The Scripps Research Institute. It is especially effective for protein-liga...1434 days ago
GeneValidator - Identify problems with predicted genes
GeneValidator helps in identifing problems with gene predictions and provide useful information extracted from ana...Priyam A, Bustos C & Wurm Y. 2016. GeneValidator: identify problems with protein-codi...2821 days ago
- In this exercise, a previously annotated gene will be used to measure the accuracy of different gene finding appro...used to annotate the sequence. Both search by signal, content and homology (protein and...
2821 days ago
