Results for "putative"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...ts between sequences. This software is useful in studying genome duplication and evolution. It can also aid in identifying uncharacterized genes, putative regulatory elements and novel...2602 days ago
List of comparative genomics resources !
...ed non-coding blocks from upstream regions of putative orthologous gene pairs from m...oach to characterize gene models and identify putative cis-regulatory regions of Ref...lusters that each represent a unique known or putative gene) Uprobe -- universa...669 days ago
Bookmarks
- ...ts in automating the runs of RECON and RepeatScout given a genomic database and uses the output to build, refine and classify consensus models of putative interspersed repeats.
2809 days ago
- ...et of DMPs, such as those hits above genome-wide significance threshold in an EWAS study, and analyses whether there is enrichment for overlap of putative functional elements compared...
2738 days ago
- +8 more Bookmarks
Files
- ...erent assembly pipelines that comprise the SPAdes package and that are used for assembly of metagenomes and transcriptomes as well as assembly of putative plasmids and biosynthetic gen...
816 days ago
Top-level pages
List of In-silico Binding Site Prediction Tools
...D models and related templates with bound ligands in order to identify putative contacting residues. However,...implementation of depth reflects how central a given sub-space is to a putative pocket rather than reflecting...3736 days ago
Commercial and public next-gen-seq (NGS) software
...ewing modes; low or high-depth read pileups; and easy visualization of putative single nucleotide and structu...scoring ChIP-Seq data relative to controls. The first pass identifies putative binding sites and compensates...3511 days ago
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Comments
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Thanks for such an informative blog. I notice MCScan is missing. MCScan is an algorithm able to scan multiple genomes or subgenomes in order to identify putative homologous chromosomal regions, and align these regions using genes as anchors. More at http://www.ncbi.nlm.nih.gov/pubmed/222176003665 days ago
