Results for "pyrosequencing data"
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Cutadapt finds and removes adapter sequences, primers, poly-A tai...r high-throughput sequencing reads. Cleaning your data in this way is often required...acters. Also, paired-end reads and even colorspace data is supported. If you want, yo...2927 days ago
- Platanus is a novel de novo sequence assembler that can reconstruct genomic sequences of highly heterozygous diploids from massively parallel shotgun sequencing data. The latest version is 1.2.4...
2927 days ago
Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfish bui...equires a reference sequence and a paired end re-sequencing data set. Hagfish has more power t...2920 days ago
RCircos: an R package for Circos 2D track plots
RCircos package provides a simple and flexible way to make Circos...with R and could be easily integrated into other R data processing and graphic manipu...esenting large-scale multi-sample genomic research data. It can also serve as a base...2920 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generatio...AIK was the only aligner to provide consistent mappings for all the generated data (sequencing technologies, low...2920 days ago
- Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.
2917 days ago
- Database to Database Conversions db2db allows for conversions of identifiers from one database to other database identif...ations. To use db2db select the input type of your data, changing the input type auto...
2907 days ago
- methylKit is an R package for DNA methylation analysis and annota...g. The package is designed to deal with sequencing data from RRBS and its variants, b...tion, methylKit can deal with base-pair resolution data for 5hmC obtained from Tab-se...
2906 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Cov...alise the contents of genome assembly data sets as a QC step Blaxter La...alise the contents of genome assembly data sets as a QC step. This repo...control of high-throughput sequencing data). It contains bash/perl/R sc...
2896 days ago
- Blobsplorer is a tool for interactive visualization of assembled DNA sequence data ("contigs") derived from (oft...kely to be of use on its own as it requires contig data to be supplied in a format th...
2895 days ago
