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MOSS: A System for Detecting Software Similarity
...g detection algorithms (at least, over those known to us). Moss can currently analyze code written in the following languages: C, C++, Java, C#, Python, Visual Basic, Javascript, FO...2332 days ago
LIBSVM -- A Library for Support Vector Machines
...d kernel matrix) Weighted SVM for unbalanced data Both C++ and Java sources GUI demonstrating SVM classification and regression Python, R, MATLAB, Pe...2461 days ago
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
...ions for new functions and incorporation of new tools in the future. Availability and Implementation The software is implemented in Python 3 and runs in both Python 2.7 and 3.4– on Macinto...2357 days ago
jobTree based python wrapper to run the genome simulation tool suite Evolver
evolverSimControl (eSC) can be used to simulate multi-chromosome genome evolution on an arbitrary phylogeny (Newick format). In addition to simply running evolver,...2333 days ago
NanoSim: nanopore sequence read simulator based on statistical characterization.
...age. The simulation stage uses the model built in the previous step to produce in silico reads for a given reference genome. NanoSim is written in Python and R. The source files and m...2323 days ago
snakepipes: A toolkit based on snakemake and python for analysis of NGS data
snakePipes are flexible and powerful workflows built using snakemake that simplify the analysis of NGS data. DNA-mapping* ChIP-seq* RNA-seq* ATAC-seq*...1796 days ago
xmatchview: smith-waterman alignment visualization
...ences in fasta format using cross_match and displays the alignment in a variety of image formats. xmatchview and xmatchview-conifer are written in python and run on linux and windows....2313 days ago