Results for "python"
Bio-Scripts
Bash commandline to install Anaconda !
...ata/workshop/wsu29/anaconda3 installing: python-3.7.3-h0371630_0 ... Python 3.7.3 installing: conda-env-...imagesize-1.1.0-py37_0 ... installing: ipython_genutils-0.2.0-py37_0 ... in...t-0.14.11-py37h7b6447c_0 ... installing: python-dateutil-2.8.0-py37_0 ... in...1549 days ago
Bash command to install Miniconda !
...7_0 - pyopenssl==19.0.0=py37_0 - pysocks==1.7.1=py37_0 - python==3.7.4=h265db76_1 - read...y37_0 pysocks pkgs/main/linux-64::pysocks-1.7.1-py37_0 python pkgs/main/linux-6...1549 days ago
Bash command to install GATK, Bedtools and SnpEff !
...| py38_1 1.9 MB python-3.8.1 | h...pkgs/main/linux-64::pip-20.0.2-py38_1 python pkgs/main/linux-6...##################################### | 100% python-3.8.1 | 57.8 MB | #...1549 days ago
Install python pip and numpy on Linux / Ubuntu
...python-gdata python-keyczar python-secretstorage-doc python-setu...bionic-updates/main amd64 libpython2.7-dev amd64 2.7.17-1~18.04 [....com/ubuntu bionic/main amd64 python-keyrings.alt all 3.0-1 [16.7...previously unselected package python-secretstorage. Preparing to...1544 days ago
Install python-numpy python-scipy python-matplotlib on Ubuntu !
...s/chaos$ sudo apt-get install python-numpy python-scipy python-matplotlib Read...atplotlib-data python-olefile python-pil python-subprocess32 pytho.../ubuntu bionic/universe amd64 python-backports.functools-lru-cache...previously unselected package python-backports.functools-lru-cache...1535 days ago
- ...o-3335-MT:~$ sudo apt-get install python3-smbc Reading package lists....EW packages will be installed: python3-smbc 0 upgraded, 1 newly in...-1build2_amd64.deb ... Unpacking python3-smbc (1.0.15.6-1build2) ......untu.com/ubuntu bionic/main amd64 python-tdb amd64 1.3.15-2 [11.1 kB]...
1533 days ago
Commands to install conda in Ubuntu !
...RSA, ElGamal, etc.). pyopenssl A thin Python wrapper around (a subset of)...ecret-key cryptography. cryptography A Python library which exposes cryptog...istent-0.14.11-py37h7b6447c_0 ... installing: python-dateutil-2.8.0-py37_0 ... in...1505 days ago
Python script to check sequence length in multifasta file
#!/usr/bin/python from Bio import SeqIO import sys cmdargs = str(sys.argv) for seq_record in SeqIO.parse(str(sys.argv[1]), "fasta"): output_line = '%s\t%i' % \ (seq_record.id, len(seq_record)) print(output_line)1209 days ago
- (JitMetaENV) ➜ ~ conda install -c bioconda quast Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer versio...
1209 days ago
- ....5.2 in /home/urbe/.local/lib/python3.6/site-packages (from bokeh=...011k in /home/urbe/.local/lib/python3.6/site-packages (from pandas...e-any.whl (25 kB) Collecting python-utils>=2.3.0 Downloading p.... Attempting uninstall: biopython Found existing installat...
1201 days ago
