EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
Quality assessment of this mRNA Transcript Assembly Software is described in EvidentialGene_quality. Too many transcript assembl...2057 days ago
BASE: a practical de novo assembler for large genomes using long NGS reads
...ld extension trees and then to use reverse validation to remove the branches based on read coverage and paired-end information, resulting in high-quality consensus sequences of reads...2039 days ago
2033 days ago
vcfR: a package to manipulate and visualize VCF data in R
...data is read into R a parser function extracts matrices from the VCF data for use with typical R functions. This information can then be used for quality control or other purposes. Ad...2033 days ago
QUAST-LG: Versatile genome assembly evaluation
QUAST-LG-a tool that compares large genomic de novo assemblies against reference sequences and computes relevant quality metrics. Since genomes generally cannot be reconstructed compl...2033 days ago
Synima: a Synteny imaging tool for annotated genome assemblies
...by the first run of Synima – and can be subsequently edited. Synima runs quickly on a command line to generate informative and publication quality figures. Synima is open sourc...2028 days ago
Referee: Genome assembly quality scores
...gies provide a succint measure of quality at each position in every rea...y process. Referee summarizes the quality information from the reads th...n assembled genome to calculate a quality score for each position in th...feree is a program to calculate a quality score for every position in a...2023 days ago
SKESA: strategic k-mer extension for scrupulous assemblies
...ds of microbial genomes sequenced using Illumina. Comparison with SPAdes and MegaHit shows that SKESA produces assemblies that have high sequence quality and contiguity, handles low-l...2013 days ago
pyGenomeTracks: Standalone program and library to plot beautiful genome browser tracks
pyGenomeTracks aims to produce high-quality genome browser tracks that are highly customizable. Currently, it is possible to plot: bigwig bed (many options) bedgraph links (represented as arcs) Hi-C matrices (if HiCExplorer is installed)2018 days ago
Genome assembly tutorial "Genome Assembly for short and long reads"
...hrough the genome assembly starting with data quality control, through to building...he lab you will know: How to perform basic quality checks on the input data How...assembly using short reads How to assess the quality of an assembly https://bio...1947 days ago