Results for "quantify"
Blogs
How to Prepare your Bioinformatics CV ?
...his position The key tasks and responsibilities that comprise this role's requirements - notable achievements whilst in the role Where possible quantify your achievements with precis...3386 days ago
BBTools for bioinformatician !
...repeat peaks. The peak caller is not perfect, though, so particularly with noisy data I would only rely on it for the first two peaks, and try to quantify the higher-order peaks manual...2283 days ago
Bookmarks
- ...ler that allows to identify SNPs, indels and alternative splicing events. It can deal with an arbitrary number of biological conditions, and will quantify each variant in each conditio...
2832 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
...te a cell x gene or cell x transcript equivalence class count matrix Perform RNA velocity and single-nuclei RNA-seq analsis Quantify data from numerous technologi...1139 days ago
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Top-level pages
Next generation sequencing in R or bioconductor environment
...hort read alignment data in BAM format (via Rsamtools) and associating them with genomic feature ranges, such as exons or genes. This way one can quantify the number of reads aligning...3637 days ago
List of visualization tools for network biology
...sed to mathematically analyze a circuit (a “network” of interconnected components). The Network analysis provides the ability to quantify associations between individu...2301 days ago
- +1 more Top-level pages
Bio-Scripts
- ...ects metrics from reduced representation bisulfite sequencing (Rrbs) data. CollectSequencingArtifactMetrics (Picard) Collect metrics to quantify single-base sequencing artifa...
2088 days ago
Groups
...al samples. Metabolome is the complete set of small-molecule metabolites found within a single biological system Targeted metabolomics aims to quantify a set of predefined metabolit...3718 days ago
Tags
kallisto: a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data
kallisto is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads ...Tags: kallisto, program, quantify, abundances, transcripts, bulk, single-cell, RNA-Seq, data
1958 days ago
dnaPipeTE: a pipeline designed to find, annotate and quantify Transposable Elements
dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not requ...Tags: dnaPipeTE, pipeline, find, annotate, quantify, Transposable, Elements, TEs
1740 days ago
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Comments
Comment on "A quick guide to Phred scaling"
Phred scaling is a widely used system for representing the quality scores of sequencing reads. It is used to quantify the probability of an error in each base call...428 days ago
