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Comment on "Basic command-line to run BLAST"
Understanding the parameters https://www.arabidopsis.org/Blast/BLASToptions.jsp417 days ago
Comment on "Benchmarking Perl Module !"
Benchmarking a Perl module involves measuring the performance of the module in term...re is a quick guide to benchmarking a Perl module using the B...ty of your Perl module. This program should take the form of...'MyModule' => \&benchmark_my_module, }); Analy...435 days ago
Comment on "A quick guide to Phred scaling"
Phred scaling is a widely used system for representing the quality scores of sequencing reads. It is...xample, a Phred score of 20 corresponds to a probability of e...ing is a logarithmic system for representing the quality scor...435 days ago
Comment on "Short-read assembly using Spades !"
Short-read assembly is the process of constructing a genome sequence from a large number of short sequencing reads. SPAdes (St...ol for short-read assembly. Here are the general steps for sh...d, "forward_reads.fastq" and "reverse_reads.fastq" are the fo...435 days ago
- There are several tools available for short read simulators that are widely used in bioinformatics research. Here are some...that uses a profile-based approach to generate synthetic rea...ch. The choice of the simulator depends on the specific resea...
435 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
If using conda conda create --name perlENV perlconda activate perlENV conda install -c bioconda perl-bundle-bioperl conda install -c bioconda perl-bioperl435 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
...env You can check using which perl - it should give you the perl that's located within your c...his case, it should install things into your conda-directory. When you in...be extra-sure, you can also install most Perl packages via conda. Replace...435 days ago
Comment on "Calculate the significance of the difference between two trends"
Useful reading material https://statsandr.com/blog/anova-in-r/437 days ago
Comment on "Short-read assembly using Spades !"
...SPAdes (St. Petersburg genome assembler) is a popular tool for short-read assembly. It can a...cial website (http://cab.spbu.ru/software/spades/). It is ava...erminal and navigate to the directory where the input data is...s adjusting the k-mer length or enabling error correction. Th...440 days ago
Comment on "Tools for Sequence translation !"
Sequence translation is the process of converting a DNA or RNA sequence into its corresponding protein sequence. T...ioPython: This is a Python library that provides several tool...tool depends on the specific requirements of the user, inclu...440 days ago
