Results for "rRNA"
Blogs
...ine on how you can obtain 16S rRNA databases: NCBI (Nationa...ic information, including 16S rRNA sequences. You can access th...eenGenes is a widely used 16S rRNA gene sequence database. You...ies, including processing 16S rRNA sequences. QIIME often inclu...27 days ago
Bookmarks
- The greengenes web application provides access to the 2011 version of the greengenes 16S rRNA gene sequence alignment for browsing, blasting, probing, and downloading. The data and t...
2883 days ago
gbtools: Interactive Visualization of Metagenome Bins in R
...to annotate the plots with taxonomic information. Different sets of annotations, including taxonomic assignments from conserved marker genes or SSU rRNA genes, can be imported simult...2613 days ago
- +3 more Bookmarks
News
Curated set of ribosomal RNA (rRNA) reference sequences (targeted loci) with verifiable organism
MCBI have a curated set of ribosomal RNA (rRNA) reference sequences (targeted loci...o these sequences, we recently added a separate rRNA/ITS databases section on the...seful links ----------------- BLAST form with rRNA/ITS databases BLAST db downl...1549 days ago
Bio-Scripts
Read a tab delimited file and search with perl
use strict; use warnings; use Data::Dumper; use Text::CSV; use IO::Handle; my $file = "/home/urbe/Tools/Alienomics_v0.1/Alienomics/output/intermediate_files/rRNA/refGene.megablast"; open my $fh, "[0]\n"; warn Dumper $row; # To see the structure }2541 days ago
- (base) jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ docker build -t autocontampr . Sending build context to Docker daemon 9.024MB Step 1/16 : FROM ubuntu:14.04 --...
1458 days ago
- +1 more Bio-Scripts
Tags
Curated set of ribosomal RNA (rRNA) reference sequences (targeted loci) with verifiable organism
MCBI have a curated set of ribosomal RNA (rRNA) reference sequences (targeted loci) with verifiable organism sources and current names. This set is critical for correctly identifying and classifying prokaryotic (bacteria and archaea) and fungal samples. To provide easy access to these sequences, ...Tags: Curated, ribosomal, RNA, rRNA, reference, sequences, targeted, loci, verifiable, organism, 16S, 18S, 28S, ribosomal, RNA
1549 days ago
- Downloading 16S rRNA databases can be crucial for various bioinformatics analyses, especially in microbiome research. However, it's important to note that databases can vary based on your specific needs, such as the taxonomic coverage you require or the type of analysis you're performing. Here's ...
Tags: 16S, rRNA, databases, bioinformatics, analyses, microbiome, research
27 days ago
Comments
Comment on "Tools for RNA classification"
...functional RNA molecules. RNAmmer: RNAmmer is a tool for predicting rRNA genes in genomic sequences. I...t uses a combination of HMM-based and BLAST-based approaches to identify rRNA sequences. tRNAscan-SE:...437 days ago
- ...ational analysis. Essentially, provides three types of quality control: read counts (such as duplicate reads, mapped reads and mapped unique reads, rRNA reads, transcript-annotated r...
2153 days ago
