ECTOOLS: Long Read Correction and other Correction tools
Long Read Correction and other Correction tools This package is a loose coll...t, the correction algorithm takes as input the unitigs from a short read assembly and uses them to correct long read data. More background informa...2326 days ago
LRCstats: Long Read Correction Statistics
...line for benchmarking DNA long read correction algorithms for long reads outputted by third generatio...ed by Pacific Biosciences. The reads produced by third generation...ced by Illumina. However, long reads are plagued by high error ra...others, and developers of long read correction algorithms will wi...2326 days ago
proovread : large-scale high-accuracy PacBio correction through iterative short read consensus
proovread : large-scale high-accuracy PacBio correction through iterative short read consensus outperforms PacB...Seq (100-500bp) Unitigs 454, ... proovread maps high coverage data to pa...2326 days ago
Dot, an interactive viewer for genome-genome comparison
...enome assemblies. A quick script called DotPrep.py converts the delta file to a more streamlined coordinates file with an index that enables Dot to read in more alignments in certain...2317 days ago
HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution
Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution" Preprint: http://biorxiv.org/content/early/2016/08/01/062117 Paper: http://ge...2293 days ago
ARCS: scaffolding genome drafts with linked reads
...application that utilizes the barcoding information contained in linked reads to further organize draft ge...road utility in harnessing the barcoding information contained in linked read data for connecting high-qual...2266 days ago
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NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore
...ex Gap-cost alignMents for Long Reads (ngmlr) is a long-read mapper designed to sensitivel...quickly and correctly align the reads, including those spanning (c...oximate mapping locations for a read and then a banded Smith-Water...earch helps to detect and split reads that cannot be aligned linea...2216 days ago
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Porechop: tool for finding and removing adapters from Oxford Nanopore reads
...is a tool for finding and removing adapters from Oxford Nanopore reads. Adapters on the ends of reads are trimmed off, and when a...its middle, it is treated as chimeric and chopped into separate reads. Porechop performs thorough...2182 days ago