2180 days ago
2175 days ago
Cerulean: A hybrid assembly using high throughput short and long reads
Cerulean extends contigs assembled using short read datasets like Illumina paired-end reads using long reads like PacBio RS long reads....rulean: A hybrid assembly using high throughput short and long reads. arXiv preprint arXiv:1307.7...2175 days ago
HALC: High throughput algorithm for long read error correction
...C, a high throughput algorithm for long read error correction. HALC aligns the long reads to short read contigs from t...low identity requirement so that a long read region can be aligned to at l...rable accuracy. The HALC corrected long reads can thus result in 11.4-60.7...2172 days ago
PRICE (Paired-Read Iterative Contig Extension), a de novo genome assembler implemented in C++.
We are pleased to release PRICE (Paired-Read Iterative Contig Extension), a de nov...plements for genome assembly: PRICE uses paired-read information to iteratively in...igs. Initially, those contigs can be individual reads from a subset of the paired-...2169 days ago
2169 days ago
2166 days ago
Many-to-many pairwise alignments of two sequence sets
needleall reads a set of input sequences and compares them all to one or more sequences, wri...exploring all possible alignments and choosing the best. A scoring matrix is read that contains values for ever...2161 days ago
2196 days ago
LAMSA: fast split read alignment with long approximate matches
...ling SV events. It is well-suited to align long reads (over thousands of base-pair...p strategy. That is, LAMSA initially splits the read into relatively long fragment...with simulated and real datasets having various read lengths and sequencing error...2196 days ago