Results for "read depth"
Blogs
Five unique traits of effective computational biologist
Bioinformatics research is driven by large set of software, scripts, and tools to anal...teresting; and the great biological programmer also read about the BioPerl packages, g...ng with scientific words. Thanks to all of you for readi...3943 days ago
Five points for bioinformatics software/tools
In the bioinformatics sector we mostly spend time on computational analysis of huge am...they’re free to download the source code and read exactly what the program does...e functionality that you need in your analysis is already...3700 days ago
- +40 more Blogs
Bookmarks
Comparison of Short Read De Novo Alignment Algorithms
Excellent article to introduce different sequencing methods along with tools for de novo assembly of sequencing reads and their relevant references. Title: Comparison of Short Read De Novo Alignment Algorithms Author: Nikhil Gopal3902 days ago
Next Generation Sequencing (NGS) Tutorials
Institute of computational biomedicine, Cornell University provide an NGS workshop tut...bioinformatics/btr441 ngs_backbone: a pipeline for read cleaning, mapping and SNP cal...p://www.biomedcentral.com/1471-2105/14/S7/S11 DDBJ read...3480 days ago
- +210 more Bookmarks
Files
- Hmm .. Don't worry you read it right .. this is not pi but bi ... "life of Bioinformatician(BI)". Disclaimer: This cartoon is solely designed to create humour and fun, not to offend any PI, supervisor or student.
3898 days ago
- DOWNLOAD LINK: https://github.com/BioInf-Wuerzburg/proovread/raw/master/util/blasr-1.3.1/blasr...ng "OPERA-LG_v2.0.5/bin/preprocess_reads.pl" and have the following e...Finding the SA coordinates of the reads using BWA aln...[Thu Jun 14...FALCON-Unzip-Scaff.bamMapping long-reads...
2144 days ago
Pages
Bio++ : C Language libraries for your biological need
C has always been a language that never attempts to tie a programmer down - it allows...ime has been change, the biological programmers are ready to use the C++ libraries of...switch between upper/lower case, etc.Applications: read...3940 days ago
- I found several useful bioinformatics articles which exaplain, define and elaborate&nb...this time aimed at highschool students, but fun to read for everyone. Includes...sby, Science , 289: 2309 (2000). Are you ready...
3913 days ago
- +10 more Pages
Top-level pages
- An algorithm is a computable set of steps to achieve a desired result. W...ch manner that from the outcome we can read a definite answer, "yes" or "...oids recomputing solutions that have already been computed. - The ma.../~jason/hmmlinks.html•http://www.breadf...
3938 days ago
Best book Titles for Learning Bionformatics
Nothing can add to our intellect more than reading a book. In books, we can ex...ives and other people’s lives. Reading can make us more intelligent, updated, imaginative. Without reading we wouldn’t know any...Human Molecular Genetics, Andrew P. Read,...3910 days ago
- +42 more Top-level pages
Wire posts
News
High Density Sheep SNP Genotyping Chip released!!!
If you are working on Sheep genomics then there is a good news for you. FarmIQ in conjunction with Illumina and th...s from 23 breeds. The remaining SNPs were derived from the draft ovine genome. Read...3889 days ago
Illumina reveals first dataset of long reads
With the help of Moleculo technology , acquired by Illumina releases new service for long reads sequencing i.e., FastTrack Long Reads. Average read length is around 8,500 base pair...n also check following pages for publications on long reads...3900 days ago
- +22 more News
Opportunity posts
Postodoc in Computational/Systems Biology and Machine Learning
One profile of Computational/Systems Biology and Machine Learning at Postdoc level i...ics, or equivalent. Especially relevant skills for the profile are: 1. In-depth understanding and implementat...3671 days ago
Project Assistant Position at JMI
Project Assistant Position (@ Rs.10,000/pm Fixed) is available for one year ina research project funded by the Dep...be paid. For any further information you may e-mail to: mihassan@jmLac.in Read...3516 days ago
- +14 more Opportunity posts
ResearchLabs posts
- In a lot of my work in bioinformatics, I have been using hidden Markov models (HMMs). As a postdoc with David Haus...here the group is working on methods for structure prediction from sequence. To read...
3862 days ago
- ...roaches including: (i) paired-end mapping (or read pair analysis) based on abnormally mapped pairs of clone ends; (ii) read-depth analysis, which detects delet...and duplications through analysis of the read depth-of-coverage; (iii) split read...
2985 days ago
- +1 more ResearchLabs posts
Fun
Perl Poem: Parse it in both Perl and English!
Larry's, er, corpus has fortunately been overshadowed by that of the reigning Perl Poet, Sharon Hopkins. She has w...,together), tell me. do something if distressed; @dawn, dance;@evening, sing;read...3911 days ago
You can't install David Brownlee ;-)
By mistake I ask cpan to install abs, and it return this message. jitendra@jitendra-Aspire-S3-391[parallelLastz] sudo cpan install abs [ 4:43AM]Going to read...1823 days ago
Video
Bioinformatics -- Understanding of living systems through information science
Recently, the progress of the Human Genome Project, aiming to decode all human DNA sequences, has highlighted a re...genome. But the amount of information involved is huge, so recently, it's been read...3909 days ago
The Story of You: ENCODE and the human genome
Ever since a monk called Mendel started breeding pea plants we've been learning about our genomes. In 1953, Watson...e ENCODE project, as it's called, is the latest chapter in the story of you. To read...3899 days ago
- +3 more Video
Bio-Scripts
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.org/ has m...dna = Entrez.efetch(db='nucleotide',id=nm, rettype = 'fasta', retmode= 'text').read(...1128 days ago
R script to visualize fastANI core-genome comparison
####### # Purpose: Visualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses genoPl...gs(TRUE)[2] fastANI_visual_file=commandArgs(TRUE)[3] library(genoPlotR) #Read...1094 days ago
- +64 more Bio-Scripts
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineerin...PMID IDs; PMID: 27378293 and PMID: 26384938 can be read. What's your all-time fa...increasing amount of data in databases, there is already...2354 days ago
Comments
- ...ript htseq-qa takes a file with sequencing reads (either raw or aligned reads) and produces a PDF file wit...uencing (NGS) data, consisting of both raw reads quality evaluation and de no...experiments: sequence quality, sequencing depth, strand specificity, GC bias,...
2130 days ago
