Results for "read depth"
Blogs
Bioinformatics tools developed for Oxford Nanopore data analysis !
MinION is the only portable real-time device for DNA and RNA&nbs...equence data. Ultra-long read lengths are possible (hundred...advantages of ONT data is the read length, which offers great pr...pper for long and error-prone readshttps://github.com/isovic/gra...ithub.com/jts/nanocorrect/ npReade...2322 days ago
How custom essay writing service work to provide essay papers that meets customers need?
Writing is more effective way to learn than reading. While writing you get more information and he...ized to their subject. This writer will carefully read through the requirements and...the paper ,also provide time for the paper to be read...2291 days ago
BBTools for bioinformatician !
BBMap.sh Mapping Nanopore reads BBMap.sh has a length cap of 6kbp. Reads longer than this will be bro...unless you generate many fold depth. Shred, on the other hand, gives you exactly 1x depth and exactly 100% coverage (a...ault, "filterbyname" discards reads with names in your name list,...2272 days ago
- ...efines.h -pthread -ftemplate-depth-30 -fno-strict-aliasing -mie...bleUpClustering.o -L. -lm -pthread -l_BubbleUpClustering_temp...efines.h -pthread -ftemplate-depth-30 -fno-strict-aliasing -miee...s_MPI_chang_temp /bin/rm lib_ReadsToTranscripts_MPI_chang_temp.a...
2134 days ago
Understating pacbio reads name !
m140415_143853_42175_c100635972550000001823121909121417_s1_p0/553/3100_11230 0.99 24 └1┘└─────2─────┘...sually "p0", "X0" when using expired reagents) ZMW hole number Subread Region (start_stop using polymerase read...1991 days ago
CANU genome assembly parameters !
Choose the appropriate parameters to run Canu and run it. The as...o cores (parameter -maxThreads=2) and you would like to dis...|m|k] \ -maxThreads=2 \ useGrid=...genomeSize=2m \ -maxThreads=2 useGrid=false \ -pac...s. More at https://canu.readt...1946 days ago
Understanding reads mapping and flags !
Linear Alignment: An alignment of a read to a single reference sequence that...ic Alignment: An alignment of a read that cannot be represented as...plementary alignment flag. Chimeric reads are indicative of structural...d the representative alignment. One read...1838 days ago
- AWK is a standard tool on every POSIX-compliant UNIX system. It&...Why use AWK instead of Perl? Readability. AWK is easier to read than Perl. For simple text-pr...# BEFORE any of the files are read. The END pattern is true afte...localvar) { # You've already seen print print "Hello...
1837 days ago
10 NGS services companies around the globe !
The global NGS services market is expected to reach USD 13.1 billion by 20...be designing, array layouts, project designing, and nucleic acid analysis to in-depth analysis. Genotypic Technolog...1261 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling evalu...-mer count information from raw, short-read sequencing data to genotype a...ipeline for the classification of long-read transcripts that can assess t...-quality consensus sequences from HiFi reads...993 days ago
