HALC: High throughput algorithm for long read error correction
HALC, a high throughput algorithm for long read error correction. HALC aligns the long reads to short read contigs from the same speci...ly low identity requirement so that a long read region can be aligned to at l...mparable accuracy. The HALC corrected long reads...2174 days ago
PRICE (Paired-Read Iterative Contig Extension), a de novo genome assembler implemented in C++.
We are pleased to release PRICE (Paired-Read Iterative Contig Extension), a de novo genome asse...implements for genome assembly: PRICE uses paired-read information to iteratively in...ontigs. Initially, those contigs can be individual reads...2172 days ago
2171 days ago
2168 days ago
Many-to-many pairwise alignments of two sequence sets
needleall reads a set of input sequences and compares them all to one or more sequences, writing their optimal glo...by exploring all possible alignments and choosing the best. A scoring matrix is read...2163 days ago
2199 days ago
LAMSA: fast split read alignment with long approximate matches
LAMSA (Long Approximate Matches-based Split Aligner) is a novel split ali...vents. It is well-suited to align long reads (over thousands of base-pair...y. That is, LAMSA initially splits the read into relatively long fragment...lated and real datasets having various read...2199 days ago
HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
HapCUT2 is a maximum-likelihood-based tool for assembling haplotypes from DNA sequence reads, designed to "just work" with excellent s...embly methods are specialized for specific read technologies or protocols, wi...including but not limited to: NGS short reads...2198 days ago
TULIP - The Uncorrected Long read Integration Pipeline
TULIP currently consists of two Perl scripts, tulipseed.perl and tulipbulb.perl. These are very much intended as p...ions are likely to follow. Tulipseed takes as input alignments files of long reads...2198 days ago
2190 days ago