Results for "read depth"
Bookmarks
...to detect variation. The methods are adaptive and support heterogeneous data sets, including variations in sequencing depth, read lengths and mixtures of paired and single-end reads. A minimum of 20 to 30 genome...2793 days ago
- ACT is a Java application for displaying pairwise comparisons between two or more DNA sequences. It can be used to...nteny, in the context of the entire sequences and their annotation. It can read...
2792 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program...rmation from paired-end/mate-pair/long reads to order and orient the inte...vided by the paired-end/mate-pair/long reads (for further details see Gao...contains the wrapper script OPERA-long-read...2790 days ago
- VALET is a pipeline for performing de novo validation of metagenomic a...-pairs are aligned at the correct distance from each other in the assembly, the depth of coverage is fairly uniform...
2777 days ago
BLAST Ring Image Generator (BRIG)
BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular...omatically via a simple GUI. Contig boundaries and read coverage can be displayed for...led sequence data. BRIG also accepts SAM-formatted read-...2769 days ago
- DECIPHER is a software toolset that can be used to maintain, analyze, and decipher large amounts of DNA sequence data. To install DECIPHER, see the Downloads page. To begin using DECIPHER read...
2769 days ago
- The MIRO (the miRNA omics) pipeline is a flexible and powerful tool for t...rall short RNA) expression using short-read deep sequencing data. In its...especially adapted for the analysis of reads generated with the Illumina...miRNA) expression profiles and cluster reads...
2765 days ago
- Watch out: only a few files are counted in coverage statistics. Full documentation on Read the Docs. A set of tools for viral metagenomics. virmet is called with a command subcommand syntax:...
2759 days ago
- Metagenomics sequencing projects collect samples of DNA from uncharacteri...genetic classification of raw sequence reads into groups representing the...d more difficult, by producing shorter read lengths than previous technol...DNA sequences, can accurately classify reads...
2759 days ago
- Visualization has played an extremely important role in the curr...r, most of the information in read-to-reference or genome-genome...l variations captured by long reads or assembled contigs often n...atterns in alignments of many reads across multiple chromosomes,...th long, short, or paired-end reads...
2748 days ago
