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...sets of genomes. Because andi does not compute full alignments, it is so efficient that it scales even up to thousands of bacterial genomes. This readme covers all necessary instruct...2923 days ago
- ...onen: Accurate selfcorrection of errors in long reads using de Bruijn graphs. Accepted to RECOMB-Seq 2016. Download: LoRMA 0.3 source files README...
2175 days ago
- _A5-miseq_ is a pipeline for assembling DNA sequence data generated on the Illumina sequencing platform. This README will take you through the steps necessary for running _A5-miseq_....
2826 days ago
- ...authors may be contacted via e-mail at: prism at cs.toronto.edu. Additional information is available in the PRISM README file and PRISM_CTX README file. http://comp...
2712 days ago
E-MEM: Efficient computation of Maximal Exact Matches
E-MEM is a C++/OpenMP program designed to efficiently compute MEMs between large genomes. See the README file for instructions on how to use E-MEM. E-MEM source code The source...2707 days ago
3d-dna: 3D de novo assembly (3D DNA) pipeline
...lds. Science, 2017. Unless otherwise noted, all terminology below is consistent with this paper, and all references to figures and tables in this readme refer to this paper. Specific...2329 days ago
Generate interactive codon usage plots
Generate interactive codon usage plots as used at ensembl.lepbase.org. The input file format can be generated from an Ensembl database using the export_json.pl script from the easy-import pipeline. live demo2267 days ago
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
...pt for analysing the mathematical distributions present in the K-mer spectra in order to determine how much content is present in each peak. This README only contains some brief deta...1991 days ago
Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data
...cing trials in the Mainstreaming Cancer Genetics programme. Tutorial https://github.com/andyrimmer/Platypus/blob/master/misc/README.txt2028 days ago
NxRepair: error correction in de novo assemblies using Nextera Mate Pair Reads
NxRepair is a python module that automatically detects large structural errors in de novo assemblies using Nextera mate pair reads. The decector will break a contig at...1937 days ago
