2943 days ago
2924 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HO...diving head first into more advanced analysis tools such as HOMER. Setti...ranscript discovery and differential analysis with Cufflinks Differential...y or RNA-Seq) Microarray Basic analysis of Affymetrix Gene Expression...2924 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on m...2921 days ago
2759 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps only the parts that are orthologous, i.e. following the co...2906 days ago
Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfish builds on the concept of coverage plots and aims to assist (amongst others) in q...2899 days ago
2899 days ago
2897 days ago
2885 days ago