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Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences
Smash is a completely alignment-free method/tool to find and visualise genomic rearrangements. The detection is based on conditional exclusive compression, namely using a FCM (Markov...2929 days ago
Comparative genomics educational material and papers bookmarks
...that both lineages evolved with an average rate of ~2.1 large-scale rearrangements per million years after the d...rtiodactyl ancestor ~60 Myr ago2. This rate compares to ~1.9 rearrangements per million years within the...2731 days ago
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Mulan: MUltiple sequence Local AligNment and conservation visualization tool
...r more) sequence alignments with an efficient and rapid "full local" alignment strategy that ensures a recapitulation of evolutionary sequence rearrangements (such as inversions and reshu...2479 days ago