Results for "reference-based"
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Well designed regular expression cheat sheet
In our computational biology work, we mostly play with DNA or AA string. For string based programming work this regular expression cheat sheet is really helpful. Keep it handy.3957 days ago
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool sets a...1153 days ago
Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
We demonstrate a novel approach forlocal alignment of DNA reads with respect to reference genome.For this process we have used Skip-gram model for creatingencoding(Nucl2Vec...1153 days ago
Rdatamining.com : R and Data Mining
This website presents examples, documents and resources on data mining with R. Documents on using R for data mining are available to download for non-commercial personal us...3923 days ago
PLOS Computational Biology: Translational Bioinformatics educational resources
PLOS present collection of Education articles: “Translational Bioinformatics”. This collection is presented as an online “book” which could se...3922 days ago
Next Generation Sequencing (NGS) Tutorials
Institute of computational biomedicine, Cornell University provide an NGS workshop tutorial at http://chagall.med.cornell.edu/NGScourse/ You can also add your f...3494 days ago
Bioinformatics Algorithm Demonstrations and Tutorials
Abstract This project presents demonstrations of selected computer science algorithms important in bioinformatics, implemented in the spreadsheet program Microsoft Ex...3711 days ago
- Flow cytometry is a biophysical laser based instrument used in various purposes like cell counting, cell sorting, biomarker detection, etc. M...
3899 days ago
- RNA Seq Basic Galaxy Tutorial RNA-Seq tutorial based on Trapnell et al. (2012) Nature Protocols In this tutorial we cover the concepts of RNA-Seq differential ge...
3660 days ago
Orione – a web-based framework for NGS analysis in microbiology
End-to-end NGS microbiology data analysis requires a diversity of tools covering bacterial resequencing, de novo assembly, scaffolding, bacterial RNA-Seq, gene annotation a...3581 days ago
