S-plot2: Rapid Visual and Statistical Analysis of Genomic Sequences
S-plot2 creates an interactive, two-dimensional heatmap capturing the similarities and d...ckly evolving coding regions, novel coding regions, and laterally transferred elements.2053 days ago
1949 days ago
UpSetR: An R Package for the Visualization of Intersecting Sets and their Properties
UpSetR generates static UpSet plots. The UpSet technique visualizes set inters...nables the effective representation of associated data, such as the number of elements in the aggregates and interse...1935 days ago
MGERT: Mobile Genetic Elements Retrieving Tool
MGERT is a computational pipeline for easy retrieving of MGE's coding sequences of a particular family from genome assemblies. MGERT utilizes several established bioinformatic tools combined into single pipeline which hides different technical quirks from an inexperienced user.1826 days ago
Apollo: First instantaneous, collaborative genomic annotation editor available on the Web
Apollo is a plug-in for the JBrowse Genome Viewer. In addition to genes and...ncRNAs (snRNA, snoRNA, tRNA, rRNA), miRNAs, repeat regions, and transposable elements; each annotation type has its...1812 days ago
dnaPipeTE: a pipeline designed to find, annotate and quantify Transposable Elements
dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datas...1739 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
chromoMap provides interactive, configurable and elegan...omosomal regions allowing users to map chromosome elements (like genes,SNPs etc.) on the...taneously on the same plot. annotating groups of elements as distinct colors. creating...1714 days ago
phyloXML: XML for evolutionary biology and comparative genomics
phyloXML (example) is an XML lan...d associated data. PhyloXML provides elements for commonly used features, s...ion events. Using these standardized elements allows interoperability betwe...nd the provision of <property> elements by phyloXML, extensibility as...1622 days ago
1571 days ago
The Global Alliance for Genomics and Health (GA4GH)
The Global Alliance for Genomics and Health (GA4GH) is a policy-framing and technical standards-setting organization, seeking to enable responsible genomic data sharing...1560 days ago