Results for "repeat content"
Top-level pages
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final results but also for impro...JVM Java Visual Mapping tool for NGS reads http://www.springer.com/cda/content/document/cda_downloaddocument...2294 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact o...ILER http://www.drive5.com/piler/ PLOTREP http://repeats.abc.hu/cgi-bin/plotrep.pl RepBase http://www.girinst.org/ RepeatF...2284 days ago
Some useful Bioinformatics links
...e | bioRxiv https://www.biorxiv.org/content/early/2017/09/10/187054 Rapi...code10.info/index.php%3Foption%3Dcom_content%26view%3Darticle%26id%3D64:i...g_algorithms_dot-plots%26Itemid%3D76 RepeatFinder Home Page http://www.cbcb.umd.edu/software/RepeatFinder/ RepeatFinderReprint.pdf...2252 days ago
Gap filling or Contigs extensions tools !
...matics-solutions/sspacev12/), ATLAS tools (http://www.hgsc.bcm.tmc.edu/content/bcm-hgsc-software), and SCAR...erest, and the set S of reads those contigs contain. Let C = C0. 2. Repeat: a. Identify paired-end reads...2175 days ago
Understanding BLASTn output format 6 !
BLASTn output format 6 BLASTn maps DNA against DNA, for example gene sequences against a reference genomeblastn -query genes.ffn -subject genome.fna -...2149 days ago
- Follow this: Settings file Error Your web server does not have permissio...Default Site Access Public The default access level for new user created content Create admin account...
902 days ago
- Types of SSRs (simple sequence repeats), SSRs are short DNA sequences consisting of a tandem repeat of a few nucleotides, typical...the length and pattern of the repeated sequence, as well as the pr...t type of SSR, where the same repeat motif is present adjacent to...
433 days ago
Steps to find all the repeats in the genome !
To find repeats in a genome from 2 to 9 length using a Perl script, you can use the RepeatMasker tool with the "--length...named "genome.fasta". ./RepeatMasker -pa <number_of_proce...for different species in the RepeatMasker documentation[0]. <...it to conveniently parse the RepeatM...258 days ago
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