Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.org/ has more (1200?), but they require you to sign up import requests impo...1137 days ago
2694 days ago
#Install older version of R Packages !
#Install older version of R Packages ! require(devtools) install_version("IdeoViz", version = "0.9.1", repos = "http://cran.us.r-project.org")2061 days ago
Bash script to get intergenic region from genome files !
#For the intergenic region, we will require the size of the chromosomes. wget http://xxx.chrom.sizes cat xxx.chrom.sizes | sed 's/^chr//' | sed 's/Cp/Pt/' > tmp mv tmp xxx.chrom....1367 days ago
1216 days ago
Tadpole is 250x faster than SPADes assembler !
...alities of corrected bases within a window exceeds this, halt correction in that direction. rbi=t (requirebidirectional) Require agreement from both...977 days ago