Results for "rna"
Top-level pages
...ssification of protein structure, prediction of RNA structure, prediction of prot...: for example, the classification with 70S, 30S RNAs established the separate kin...hods Mol. Biol. 132:185–219The Genome International Sequencing Consortium (...3956 days ago
Phylogenetic for Bioinformatics
...en represents the phylogeny of organisms, i. e., the history of organismal lineages as they change through time.Every living organism contains DNA, RNA, and proteins. Closely relate...3955 days ago
Useful Links for Bioinformaticians
...orials/articles/riley/riley.html www.tulane.edu/~biochem/nolan/lectures/rna/intro.htm http://lenti.med.u...l DNA tutorial DNA from the beginning Central Dogma Glossary About RNA www.imsb.au.dk/~raybrown/...3139 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...ntal design Statistical design and analysis of RNA sequencing data. Auer & D...genome Full-length transcriptome assembly from RNA-Seq data without a reference...o transcriptome assembly pipeline from stranded RNA-Seq reads. Martin et al, BMC...3788 days ago
List of bioinformatics open source projects/software.
...software suite for the analysis of functional genomics experiments, e.g. RNA-seq or ChIP-seq. GeneTalk h...nductor package for omics data analysis using a supra-hexagonal map Taverna workbench Tool for designing...3766 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...ERS BEERS was designed to benchmark RNA-Seq alignment algorithms and...onstruct different isoforms and alternate splicing from RNA-Seq data...n of the experimental pipelines for RNA-Seq, employing a minimal set...p://www.ebi.ac.uk/projects/bargen/kernalPop A spatially explicit popu...3746 days ago
Next generation sequencing in R or bioconductor environment
...to various genome browsers and file formats (such as GFF). See the Small RNA Profiling exercise for an exa...obtain enriched Gene Ontology (GO) terms, find the nearest gene, exon, miRNA or custom features such as mo...3633 days ago
Commercial and public next-gen-seq (NGS) software
...ysis workflows for: ChIP-Seq, RNA-Seq, DNA-Seq, DNA Methylation, Gene Expression, Exon, miRNA Expression, Copy Number, Alle...g and Alignment Program) for mRNA and EST Sequences. Developed...ime to update this list. Alternate Base Calling Rolexa - R-bas...3528 days ago
- ...DBs and tools related with miRNA: miRNA Sequencing data analy.../tools.genxpro.net/omiras/ miRNApath( R based tool) : &nb...ld.de/rnahybrid/welcome.html RNA22 predictor : http://cbc...com/ssa_mirnas_db_home.php miRNA prediction on UTRs : htt...
3505 days ago
Software packages for next gen sequence analysis
...AP (Genomic Mapping and Alignment Program) for mRNA and EST Sequences. Developed...align Illumina reads against a range of Refseq RNA or NCBI genome builds for a n...32, Solaris and Mac * PolyBayesShort - A re-incarnation of the PolyBayes SNP disc...3251 days ago
