Software packages for next gen sequence analysis
...ptomics * ERANGE - Mapping and Quantifying Mammalian Transcriptomes by RNA-Seq. Supports Bowtie, BLAT and EL...From the Wold lab. * G-Mo.R-Se - G-Mo.R-Se is a method aimed at using RNA-Seq short reads to build de novo...3236 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...nt tools including alignment, RNA-Seq, DNA-Seq, ChIP-Seq, Small RNA-Seq, Genome Browser, visualizatio...assembly, variant detection, RNA-Seq, ChIP-Seq, Genome Browser, et...cing (NGS) workflows include: RNA-Seq, miRNA-Seq, ChIP-Seq, DNA-Seq...2902 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly repetitive DNA sequences ( see Reassociati...2204 days ago
2862 days ago
Genome Assembly Tools and Software - PART1 !!
...Novo Transcriptome Assembly from RNA-seq Data BinPacker is a novel...e Assembly pipeline from stranded RNA-Seq reads Comprehensive annota...m targeted gene assembly for both RNA-Seq and metagenomic data. It addr...criptome assembler that assembles RNA-seq reads into transcripts. SSP a...2679 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which have originated from two different ancestors. ancestor -- Any organism, population, or species from which so...2455 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...ipt abundance quantification from RNA-seq data (uses pseudoalignment fo...nces from reference sequences and RNA-seq data (k-mer based) Software...e expression of transcripts using RNA-seq data (uses k-mers) http...gene k-mers profiles of the RNA-seq paired-end reads Software (J...2364 days ago
2344 days ago
Single Cell RNAseq data analysis tutorial !!
...orkflow for low-level analysis of single-cell RNA-seq data A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor SCell...e latent-factor models applied to single-cell RNA-seq data separate biological driv...2344 days ago
2344 days ago