BOL: Results for "sed"

Results for "sed"

- Jit@jit.aber
Remove the unnecessary #fasta #header. $ sed 's/\s.*$//' Adineta_vaga_v2.0.scaffolds.fa > new_file.fasta
2497 days ago
- Rahul Nayak@rahul
Remove unwanted character from fasta file. sed -e '/^[^>]/s/[^ATGCatgc]/N/g' file.fa #fasta #file #header #charater
2484 days ago
- Rahul Nayak@rahul
Remove "|" from fasta header. $ sed 's,|,_,g' -i file.fa #fasta #header #sed
2484 days ago
- Jit@jit.aber
Remove unwanted character from fasta file. $ sed -e '/^[^>]/s/[^ATGCatgc]/N/g' file.fa #IUPAC #Special #Character #Remove
2472 days ago
- Jit@jit.aber
Fastq 2 fasta. $ sed -n '1~4s/^@/>/p;2~4p' test.fastq > test.fasta #fastq #fasta #convert
2357 days ago
- Surabhi Chaudhary@surabhi
Remove the unwanted characters from Fasta file: sed -e '/^[^>]/s/[^ATGCatgc]/N/g' infile.fa #sed #unwanted #illegal #remove #correct #fasta #linux
2347 days ago
- Jit@jit.aber
Convert lowercase letter to N:$ sed -e '/^>/! s/[[:lower:]]/N/g' in.fasta > out.fasta #Convert #Lowercase #Fasta #N
2220 days ago
- Neelam Jha@neelam
sed -i -e '/^+/,/^\@/{/^+/!{/^\@/!d}}; /^+/ d; s/@/>/g' OUTPUT.fastq > out.fa #Convert
2156 days ago
- Aaryan Lokwani@aaryan
Sed illegal charters from fasta. $ sed '/^[^>]/ s/[^AGTC]/N/gi' < seq.fa #fasta #otherthanATGC #replace #sed #Linux #illegal
2146 days ago
- BioStar@biostar
Remove empty line from fasta. $ sed -i '/^$/d' standard_output.final.scaffolds_online.fasta #Empty #Fasta #Remove
2054 days ago