Alignment of closely related whole genomes/scaffolds
...uenced genomes for species across the tree of life. This increasing volume of data requires tools that can quickly compare multiple whole-genome sequences, millions of base pairs in le...3016 days ago
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RNA-Seq De novo Assembly Using Trinity
...rks like so: Inchworm assembles the RNA-seq data into the unique sequences of transcripts, often generat...anscriptonal complexity for a given gene (or sets of genes that share sequences in common). Chrysalis then pa...2963 days ago
PAired-eND Assembler for DNA sequences
PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. More at https://github.com/neufeld/pandaseq2949 days ago
2948 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
...y pipeline which runs in four steps: Detect overlaps in high-noise sequences using MHAP Generate corrected sequence consensus Trim corrected sequences Assemble trimmed corrected s...2912 days ago
Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences
Smash is a completely alignment-free method/tool to find and visualise genomic rearrangements. The detection is based on conditional exclusive compression, namely u...2928 days ago