Bandage: interactive visualization of de novo genome assemblies
...onnections. Users can zoom in to specific areas of the graph and interact with it by moving nodes, adding labels, changing colors and extracting sequences. BLAST searches can be perfor...2356 days ago
ACANA: An accurate and consistent alignment tool for DNA sequences
...NA is an accurate and consistent alignment tool for DNA sequences. ACANA is specifically designed for aligning sequences that share only some moderate...thms in searching for evolutionarily related regions of sequences in order to achieve the best...2354 days ago
FOGSAA: Fast Optimal Global Sequence Alignment Algorithm
...sed to infer similarirty and the point of differences between pair of sequences. FOGSAA is a fast Global alig...h expansion in a greedy way taking the symbols from the given pair of sequences (protein or nucleotide) and r...2351 days ago
SMASH: An alignment-free tool to find and visualise rearrangements between pairs of DNA sequences
SMASH is a completely alignment-free method to find and visualise rearrangements between pairs of DNA sequences. The detection is based on relative compression, namely using a FCM...2339 days ago
PASA: Gene Structure Annotation and Analysis
...onym for Program to Assemble Spliced Alignments, is a eukaryotic genome annotation tool that exploits spliced alignments of expressed transcript sequences to automatically model gene s...2333 days ago
Recovery of complete genomes from metagenomes
This project contains scripts and tutorials on how to assemble individual microbial genomes from metagenomes, as described in: Genome sequences of rare, uncultured bacteria obtained b...2333 days ago
xmatchview: smith-waterman alignment visualization
...fer are imaging tools for comparing the synteny between DNA sequences. It allows users to align 2 DNA sequences in fasta format using cross_m...mentation of the Smith-Waterman algorithm for comparing DNA sequences that is sensitive. http://ww...2332 days ago
Jabba: Hybrid Error Correction for Long Sequencing Reads
...put Jabba takes as input a concatenated de Bruijn graph and a set of sequences: the de Bruijn graph should...ode, the meta information should be in the format:>NODE the set of sequences should be in fasta or fastq f...1993 days ago
LRCstats: Long Read Correction Statistics
...ds produced by simulators (such as SimLoRD or PBSim) where the two-way alignments between the uncorrected long reads (uLR) and the corresponding sequences in the reference genome (Ref)...2324 days ago
MUMmer4: A fast and versatile genome alignment system
...that offers improved speed through parallel processing of input query sequences. With a theoretical limit on the input size of 141Tbp, MUMmer4 can now work with input sequences of any biologically realistic...2295 days ago