Results for "sequences"
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...sum / n; }' To get sequence length for all sequences in a fasta file: awk '/^>...iles using pigz: pigz *.fastq To count all sequences in a fasta file: grep "^>...txt To sample only 200 first bases from all sequences in a multifasta file (e.g. fr...2218 days ago
Tools to Predict the Impact of Missense Variants !
...tions that disrupt highly conserved amino acids within protein‐coding sequences, which are likely to be uncon...ion” FatHMM unweighted (FatHMM‐U)Predicts “functional consequences of both coding variants, that...2204 days ago
Gap filling or Contigs extensions tools !
...ur average sequencing depth for the region of interest exceeds 25 or so without filling all gaps, it is likely that the remaining gaps represent sequences that are not getting cloned i...2166 days ago
LINKS scaffolder bloomfilter setting !
...cd .. ➜ bin git:(master) ✗ ./LINKS Usage: ./LINKS [v1.8.6] -f sequences to scaffold (Multi-FASTA form...ame for your output files (optional) -r Bloom filter input file for sequences supplied in -s (optional, if...2152 days ago
Understanding BLASTn output format 6 !
...format 6 BLASTn maps DNA against DNA, for example gene sequences against a reference genomebla...tsend End of alignment in subjectqseq Aligned part of query sequencesseq Aligned part of subje...2139 days ago
- Types of SSRs (simple sequence repeats), SSRs are short DNA sequences consisting of a tandem repeat of a few nucleotides, typically 2-6 nucleotides in length. There...
424 days ago
Mitochondrial genome assembly tools !
...that can be employed for mitochondrial genome assembly, especially when dealing with complex datasets that may contain nuclear mitochondrial DNA sequences (numts). IDBA-UD: IDBA-UD (I...243 days ago
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