Results for "sequences"
Tags
gVolante: Completeness Assessment of Genome/Transcriptome Sequences
A brand-new web server, gVolante, which provides an online tool for (i) on-demand completeness assessment of sequence sets by means of the previously developed pipelines CEGMA and BUSCO and (ii) browsing pre-computed completeness scores for publicly available data in its database sectionTags: gVolante, Completeness, Assessment, Genome, Transcriptome, Sequences
1939 days ago
gVolante: Completeness Assessment of Genome/Transcriptome Sequences
gVolante provides an online interface for completeness assessment of user’s original or publicly available sequence datasets as well as for browsing results of completeness assessment performed on publicly available genome and transcriptome assemblies.Tags: gVolante, Completeness, Assessment, Genome, Transcriptome, Sequences
1734 days ago
Predict Gene Ontology with sequences !
PANNZER (Protein ANNotation with Z-scoRE) is a fully automated service for functional annotation of prokaryotic and eukaryotic proteins of unknown function. The tool is designed to predict the functional description (DE) and GO classes. PANNZER2 processes bacterial proteomes in minutes and ...Tags: Predict, Gene, Ontology, Sequences, GO
1397 days ago
- Perform Alignment-free k-tuple frequency comparisons from sequences. This can be in the form of two input files (e.g. a reference and a query) or a single file for pairwise comparisons to be made.
Tags: KAST, Alignment, K-tuple, Compare, Genome, Sequences
802 days ago
GenBank release 257.0 is now available!
GenBank release 257.0 is now available! This release has 25.10 trillion bases and 3.69 billion records. Learn more: https://ncbiinsights.ncbi.nlm.nih.gov/2023/08/21/genbank-release-257/ GenBank release 257.0 (8/15/2023) is now available on the NCBI FTP site. This release has 25.10...Tags: GenBank, Release, Dataset, Records, Sequences
256 days ago
Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
We demonstrate a novel approach forlocal alignment of DNA reads with respect to reference genome.For this process we have used Skip-gram model for creatingencoding(Nucl2Vec) and k-nearest neighbor for the alignment.With our new approach we have reduced computation cost forlocal alignment , while ...Tags: Nucl2Vec, Local, alignment, DNA, sequences, Distributed, Vector, Representation
1146 days ago
ACANA: An accurate and consistent alignment tool for DNA sequences
ACANA is an accurate and consistent alignment tool for DNA sequences. ACANA is specifically designed for aligning sequences that share only some moderately conserved regions and/or have a high frequency of long insertions or deletions. It attempts to combine the best of local and global alignment...Tags: ACANA, accurate, alignment, tool, DNA, sequences
2342 days ago
SMASH: An alignment-free tool to find and visualise rearrangements between pairs of DNA sequences
SMASH is a completely alignment-free method to find and visualise rearrangements between pairs of DNA sequences. The detection is based on relative compression, namely using a FCM, also known as Markov model, of high context order (typically 20). The method has been approached with a tool (a...Tags: SMASH, alignment-free, tool, find, visualise, rearrangements, pairs, DNA, sequences
2327 days ago
