CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII or Oxford Nanopore MinION). The software is currently alpha...2908 days ago
2908 days ago
2908 days ago
Hagfish - assess an assembly through creative use of coverage plots
...fish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfish bu...ome assembly or identification of structural variation in a genome re-sequencing experiment. Hagfish requires...2901 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...gram for mapping second and third-generation sequencing reads to a reference genome....K can align reads generated by all the major sequencing technologies, including Illum...sistent mappings for all the generated data (sequencing technologies, low-coverage an...2901 days ago
2901 days ago
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2160 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing you need to hit a target depth of coverage (or vice versa). Instructions: set the read length/configuration and genome s...2160 days ago