Results for "short"
Top-level pages
...bmitting and updating entries to the GenBank, EMBL, or DDBJ sequence databases. It is capable of handling simple submissions that contain a single short mRNA sequence, and complex su...3946 days ago
Bioinformatics Courses Around the World
...bsp;, UK Bioinformatics Centre , School of Pathology OUBC training courses Part-time Modular MSc in Bioinformatics and regular short professional updating courses...3947 days ago
Most Commonly used Awk by Bioinformatician
...ls: http://www.gnu.org/software/gawk/manual/gawk.html http://www.grymoire.com/Unix/Awk.html A famous list of useful one-liners - though they're short, many are quite tricky: http...3916 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...2, 2011. PubMed Fast and accurate short read alignment with Burrows-W...Home Page FASTX-toolkit: FASTQ/A short-reads pre-processing tools Ho...competitive assessment of de novo short read assembly methods. Earl e...edCentral Microindel detection in short-read sequence data. Krawitz e...3784 days ago
Next generation sequencing in R or bioconductor environment
...level packages like GenomicRanges, ShortRead, Rsamtools, etc. Document...ortant BioC-Seq packages including ShortRead, Rsamtools, rtracklayer,...nomic regions as input and outputs short DNA sequences that are overre...vides support for importing into R short read alignment data in BAM fo...3629 days ago
Commercial and public next-gen-seq (NGS) software
...r Mac OS X.SHORE - SHORE, for Short Read, is a mapping and analysis pipeline for short DNA sequences produced on a I...omeMapper - GenomeMapper is a short read mapping tool designed fo....SSAHA has been optimized for short-reads, too. But yes, SSAHASNP...3523 days ago
Software packages for next gen sequence analysis
...ac OS X. * SHORE - SHORE, for Short Read, is a mapping and analysis pipeline for short DNA sequences produced on a I...omeMapper - GenomeMapper is a short read mapping tool designed fo...2, Solaris and Mac * PolyBayesShort - A re-incarnation of the Pol...3247 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...Wellcome Trust Sanger) calls small indels from short-read sequences, only can hand...in C, Python, Cython; Can identify SNPs, MNPs, short indels, and larger variants;...theorem; calls consensus genotype Input:SOAP short read alignment results Outpu...2913 days ago
- ...h ends of the same fragment and keep track of the paired data. Adapter Short oligonucleotides which are at...sp; A fully assembled version of a genome that can be used for mapping short DNA sequence reads for compar...
2873 days ago
Genome Assembly Tools and Software - PART1 !!
...data inquiry, high-throughput short reads data is always initiall...Calling pipeline for Illumina Short Reads FermiKit is a d...– A Suffix Array based Short Peptide Assembler for Metagen...sembler ABySS (Assembly By Short Sequences) is a de novo, para...2690 days ago
