Quick next generation sequencing (NGS) terms definition
...ly be mapped to the reference genome by breaking into two sub-reads is called a split-read. These types of reads also indicate a potential SV or a short insertion or deletion (indel)...2537 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...Software (C++) https://github.com/marbl/mash Kraken Taxonomic assignment in metagenome analysis by exact k-mer search; LCA assignment of short reads based on a comprehensiv...2386 days ago
2366 days ago
List of visualization tools for genome alignments
...on http://lookseq.sourceforge.net MagicViewer Visualization of short read alignment, identificatio...iewer/ MapView Alignments of huge-scale single-end and pair-end short reads http://omictools.com/m...2299 days ago
Installing Bio::SCF perl module
...ability... yeschecking zlib.h presence... yeschecking for zlib.h... yeschecking whether byte ordering is bigendian... nochecking for short... yeschecking size of short... 2checking for int... yesch...2233 days ago
Gap filling or Contigs extensions tools !
There are many tools to perform gap filling using Illumina short reads, for example "GapFiller: a de novo assembly approach to fill the gap within paired reads" or "Toward almost clo...2180 days ago
2078 days ago
Bioinformatics Training Courses At RASA LSI
...ormatics, Bioinformatics etc.The workshops are highly beneficial for working professionals, students, researcher for enhancements of the skills in short duration.1657 days ago
Bioinformatics in Africa:- Part 1
...ll; Development of West Africa Centre training in bioinformatics and genome data analysis. Shortterm training a...1205 days ago
Short-read assembly using Spades !
...sembly_all_illumina -1 is input file of forward reads -2 is input file of reverse reads --careful minimizes mismatches and short indels --cov-cutoff auto&nbs...840 days ago