Results for "short reads mapping"
Top-level pages
Genomics is the study of the genomes of organisms. The field incl...hniques of sequencing, genome mapping, data storage, and bioinforma...eting held in Maryland on the mapping of the human genome in 1986.T...issions that contain a single short mRNA sequence, and complex subm...3943 days ago
Bioinformatics Courses Around the World
Bioinformatics Courses around the world Here is the list Bioinformatics courses offere...metryhttp://www.cs.helsinki.fi/combi/ Human Genome Mappi...Part-time Modular MSc in Bioinformatics and regular short professional updating courses,...3944 days ago
Most Commonly used Awk by Bioinformatician
Awk is a programming language that is specifically designed for quickly manipulating...://www.grymoire.com/Unix/Awk.html A famous list of useful one-liners - though they're short,...3913 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...Page FASTX-toolkit: FASTQ/A short-reads pre-processing tools Home Pag...tral Microindel detection in short-read sequence data. Krawitz et...sis of the resulting sequence reads.] Genotyping by sequencing Ge...r rapid and efficient genetic mapping. Andolfatto et al. Genome Res...3780 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with brief description and homepage...MetaSim A tool to generate collections of synthetic reads that reflect the diverse taxo...it.ly/rlsim-gitpIRS Profile-based Illumina pair-end reads s...3738 days ago
List of In-silico Binding Site Prediction Tools
Following are the list of In-silico Binding Site Prediction in Proteins tools CASTp : http://sts.bioengr.uic.edu/...ns channels, calculate pore dimensions and analyze atom accessibility. MolAxis reads f...3745 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data...regions as input and outputs short DNA sequences that are overre...ly focused on Solexa/Illumina reads. Documentation Rsamtools Rs...concentrations of directional reads, and uses DNA fragment length...support for importing into R short r...3625 days ago
Commercial and public next-gen-seq (NGS) software
...r Mac OS X.SHORE - SHORE, for Short Read, is a mapping and analysis pipeline for short DNA sequences produced on a I...omeMapper - GenomeMapper is a short read mapping tool designed for accurate....SSAHA has been optimized for short-reads, too. But yes, SSAHASNP a...3520 days ago
Software packages for next gen sequence analysis
...ac OS X. * SHORE - SHORE, for Short Read, is a mapping and analysis pipeline for short DNA sequences produced on a I...omeMapper - GenomeMapper is a short read mapping tool designed for accurate...ut 20-25X coverage and paired reads. Developed by Daniel Zerbino an...3243 days ago
Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key to understand...itapad/ Web tools for pathways ArrayXPath Mapping and visualizing microarray ge...://metpa.metabolomics.ca Omics Viewer Data mapping on BioCyc pathways (collectio...2288 days ago
