Results for "short reads mapping"
Blogs
List of genome announcement, notes and reporting journals
Faced with an increasing number of articles describing DNA data and...nals have started accepting very short manuscripts (500–1500 w...broadly as genome reports. Their short length and minimal number (or...s note, Impact factor 3.7, Short...om/ 8. 3biotech, Springer, Short g...2022 days ago
String graph based genome assembly software and tools !
...ge genomes from high coverage short read data. SGA is designed as...ts base calling errors in the reads. The second phase assembles contigs from the corrected reads. The third phase uses paired...in running FSG on multiple threads. Moreover, we have studied th...s on assembling Illumina short s...2342 days ago
Letter of motivation for bioinformatics applicants !
A motivation letter, or sometimes called letter of motivation or motivational letter, is act...d them, enrich their content; an example would be : Make your goal clear; provide a short p...2339 days ago
Installing Perl environment on Linux
By using plenv, you can easily install and switch among different ve...ashrc $ plenv install 5.18.1 -Dusethreads $ plenv rehash $ plenv gl...ndard output (or sometimes STDOUT for short), and the other is a standard...ltithreading (with option -Dusethreads),...2335 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
MinION is the only portable real-time device for DNA and RNA sequenc...aphMapMapper for long and error-prone readshttps://github.com/isovic/grap.../ marginAlignTools to align nanopore reads to a referencehttps://github....blers for Oxford Nanopore MinION long reads...2334 days ago
BBTools for bioinformatician !
BBMap.sh Mapping Nanopore reads BBMap.sh has a length cap of 6kbp. Reads longer than this will be brok...ut I found 1000 gave a higher mapping rate. Using Paired-end and single-end reads at the same time BBMap its...dapter sequence of reads with short insert sizes, in case you don...2284 days ago
Install ImageMagick from Unix Source
ImageMagick builds on a variety of Unix and Unix-like operating syste...is Clang... nochecking whether pthreads work with -pthread... yeschec...special flags are required for pthreads... nochecking for PTHREAD_PRI...uble... 16checking size of signed short... 2checking size of unsigned short.....2160 days ago
chromoMap-An R package for Interactive visualization and mapping of human chromosomes
chromoMap is an R package that provides interactive, con...viz. the "chromosome heatmap" that, in addition to mapping elements, can visualize the d...n. You can map thousands of genes and can view all mappings easily. Users can investigat...2154 days ago
- Download this https://github.com/trinityrnaseq/trinityrnaseq/release...-deprecated -m64 -g -O2 -MT pull_reads_with_kmers.o -MD -MP -MF .deps/pull_reads_with_kmers.Tpo -c -o pull_rea...-fopenmp -c ./analysis/ReadsToTranscripts.cc -o obj/analys...has been Installed Properly ReadsTo...
2147 days ago
List of motif discovery tools !
In genetics, a sequence motif is a nucleotide or amino-acid seq...protein sequences Search for short active protein sequences with...structural and topographical mapping of functionally annotated r...r motifs in proteins Predict short...leotide sequences Search for short nucleotide or peptide sequences...2007 days ago
