2945 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents knowledge which...ources) Checking sequence quality, trimming, general sequence manipulation Mapping reads to a reference genome Manipula...2945 days ago
mrFAST: Micro Read Fast Alignment Search Tool
...s a read mapper that is designed to map short reads to reference genome with a sp...and segmental duplications. mrFAST maps short reads with respect to user defined...ST is designed to find 'all' mappings for a given set of reads, however it can return one "bes...2945 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to anal...ets of any size on multi-core desktop computers, including very huge amount of reads d...2942 days ago
2931 days ago
2928 days ago
2928 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...e and open-source program for mapping second and third-generation sequencing reads to a reference genome. Uniquely among current mapping tools, MOSAIK can align reads generated by all the major sequ...capture mismatches as well as short insertions and deletions. To su...2920 days ago
2920 days ago
2180 days ago