Results for "short reads mapping"
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Gene finding in eukaryotic genomes is notoriously difficult to automate. The task is to design a work flow with a...er that usually requires supervised training and uses information from RNA-Seq reads i...1972 days ago
- Redundans pipeline assists an assembly of heterozygous genomes.Program takes as input assembled contigs,...y scaffolding: joining of genome fragments using paired-end and/or mate-pairs reads...
2824 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program...mation from paired-end/mate-pair/long reads to order and orient the inter...ided by the paired-end/mate-pair/long reads (for further details see Gao...ad that enables scaffolding with long-reads f...2816 days ago
- Fermi is a de novo assembler with a particular focus on assembling Illumina short sequence reads from a mammal-sized genome. In addition...to represent all the information in raw reads.Fermi follows the overlap-lay...to fix misassemblies by using paired-end reads&n...
2816 days ago
BLAST Ring Image Generator (BRIG)
BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circul...or even raw, unassembled sequence data. BRIG also accepts SAM-formatted read-mapping files enabling genomic region...2795 days ago
- Development of cancer is driven by somatic alterations, including numerical and stru...tain CNA profiles. Next, a tailored annotation approach for breakpoint-to-gene mapping is implemented. Finally, dedi...
2175 days ago
- The MIRO (the miRNA omics) pipeline is a flexible and powerful tool fo...nalysis of miRNA (or more generall short RNA) expression using short-read deep sequencing data. In...cially adapted for the analysis of reads generated with the Illumina s...RO allows to preprocess the Solexa-reads,...
2791 days ago
- BBMAP • a solution for everything That content has been refo...nput/output format is automatically chosen/set. Using BBMap Mapping Nanopore reads BBMap.sh has a length cap of 6kbp. Reads longer than this will be broken...
2785 days ago
- Watch out: only a few files are counted in coverage statistics. Full documentation on ...pack analyze a Miseq run covplot plot coverage for a specific organism A short h...
2785 days ago
- Metagenomics sequencing projects collect samples of DNA from unch...lassification of raw sequence reads into groups representing the...more difficult, by producing shorter read lengths than previous...for classifying sequences as short as 100 base pairs (bp) have u...nces, can accurately classify reads a...
2785 days ago
